IL_9PBE_151

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

UGUA(PSU)(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

9PBE|1|L5|U|4634, 9PBE|1|L5|PSU|4636

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PBE|1|L5|U|4632
9PBE|1|L5|G|4633
9PBE|1|L5|U|4634
9PBE|1|L5|A|4635
9PBE|1|L5|PSU|4636
9PBE|1|L5|OMG|4637
*
9PBE|1|L5|C|4662
9PBE|1|L5|G|4663
9PBE|1|L5|A|4664
9PBE|1|L5|A|4665
9PBE|1|L5|G|4666

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LW

Ribosomal protein L24

Chain Ld

60S ribosomal protein L31