IL_9PBE_192

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GGAUAAC*GCUAA(OMU)A(OMC)

Length

15 nucleotides

Bulged bases

9PBE|1|S2|OMU|172

QA status

Modified nucleotides: OMU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PBE|1|S2|G|145
9PBE|1|S2|G|146
9PBE|1|S2|A|147
9PBE|1|S2|U|148
9PBE|1|S2|A|149
9PBE|1|S2|A|150
9PBE|1|S2|C|151
*
9PBE|1|S2|G|167
9PBE|1|S2|C|168
9PBE|1|S2|U|169
9PBE|1|S2|A|170
9PBE|1|S2|A|171
9PBE|1|S2|OMU|172
9PBE|1|S2|A|173
9PBE|1|S2|OMC|174

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

Ribosomal protein L24

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24