IL_9PBE_216

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

9PBE|1|S2|A2M|668

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PBE_216 not in the Motif Atlas

Homologous match to IL_9H3G_189

Geometric discrepancy: 0.0724

The information below is about IL_9H3G_189

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

9PBE|1|S2|G|665
9PBE|1|S2|U|666
9PBE|1|S2|U|667
9PBE|1|S2|A2M|668
9PBE|1|S2|A|669
9PBE|1|S2|A|670
9PBE|1|S2|A|671
*
9PBE|1|S2|U|1161
9PBE|1|S2|C|1162

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain SX

40S ribosomal protein S23

Chain Sa

40S ribosomal protein S26