IL_9PBE_252

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

UGG*UCUGUGA

Length

10 nucleotides

Bulged bases

9PBE|1|S2|U|1494, 9PBE|1|S2|G|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PBE|1|S2|U|1333
9PBE|1|S2|G|1334
9PBE|1|S2|G|1335
*
9PBE|1|S2|U|1492
9PBE|1|S2|C|1493
9PBE|1|S2|U|1494
9PBE|1|S2|G|1495
9PBE|1|S2|U|1496
9PBE|1|S2|G|1497
9PBE|1|S2|A|1498

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SD

Small ribosomal subunit protein uS3

Chain SK

40S ribosomal protein S10

Chain SU

40S ribosomal protein S20

Chain Sd

40S ribosomal protein S29