IL_9PBE_258

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

9PBE|1|S2|C|1434, 9PBE|1|S2|C|1437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PBE|1|S2|U|1408
9PBE|1|S2|A|1409
*
9PBE|1|S2|U|1432
9PBE|1|S2|C|1433
9PBE|1|S2|C|1434
9PBE|1|S2|C|1435
9PBE|1|S2|C|1436
9PBE|1|S2|C|1437
9PBE|1|S2|A|1438

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein uS9

Chain SU

40S ribosomal protein S20