IL_9PDF_011

3D structure

PDB id

9PDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Three-dimensional structure of kinase inhibitor Palbociclib-HIV TAR complex

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

G(AP7)U(CH)UG*CUC

Length

9 nucleotides

Bulged bases

9PDF|11|A|U|23

QA status

Modified nucleotides: AP7, CH

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PDF|11|A|G|21
9PDF|11|A|AP7|22
9PDF|11|A|U|23
9PDF|11|A|CH|24
9PDF|11|A|U|25
9PDF|11|A|G|26
*
9PDF|11|A|C|39
9PDF|11|A|U|40
9PDF|11|A|C|41

Current chains

Chain A

RNA (29-MER)

Nearby chains