IL_9PG8_100

3D structure

PDB id

9PG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P-E state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CCG*CAUG

Length

7 nucleotides

Bulged bases

9PG8|1|AA|C|1484, 9PG8|1|AA|U|1568

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PG8_100 not in the Motif Atlas

Homologous match to IL_6CZR_165

Geometric discrepancy: 0.1442

The information below is about IL_6CZR_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

9PG8|1|AA|C|1483
9PG8|1|AA|C|1484
9PG8|1|AA|G|1485
*
9PG8|1|AA|C|1566
9PG8|1|AA|A|1567
9PG8|1|AA|U|1568
9PG8|1|AA|G|1569

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain 8

39S ribosomal protein L40, mitochondrial

Chain A3

Aurora kinase A-interacting protein

Chain Ax

P/P-tRNA

Chain Az

mRNA