IL_9PGF_078

3D structure

PDB id

9PGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

AUCACCCCCUCCCCAAU*AACAUAU

Length

24 nucleotides

Bulged bases

9PGF|1|AA|C|954, 9PGF|1|AA|C|959, 9PGF|1|AA|C|962, 9PGF|1|AA|A|966

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PGF|1|AA|A|952
9PGF|1|AA|U|953
9PGF|1|AA|C|954
9PGF|1|AA|A|955
9PGF|1|AA|C|956
9PGF|1|AA|C|957
9PGF|1|AA|C|958
9PGF|1|AA|C|959
9PGF|1|AA|C|960
9PGF|1|AA|U|961
9PGF|1|AA|C|962
9PGF|1|AA|C|963
9PGF|1|AA|C|964
9PGF|1|AA|C|965
9PGF|1|AA|A|966
9PGF|1|AA|A|967
9PGF|1|AA|U|968
*
9PGF|1|AA|A|1036
9PGF|1|AA|A|1037
9PGF|1|AA|C|1038
9PGF|1|AA|A|1039
9PGF|1|AA|U|1040
9PGF|1|AA|A|1041
9PGF|1|AA|U|1042

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A2

Small ribosomal subunit protein mS37

Chain AE

28S ribosomal protein S6, mitochondrial

Chain AJ

28S ribosomal protein S12, mitochondrial

Chain AL

28S ribosomal protein S15, mitochondrial

Chain AN

28S ribosomal protein S17, mitochondrial

Chain AP

28S ribosomal protein S18c, mitochondrial

Chain AS

28S ribosomal protein S23, mitochondrial

Chain AT

28S ribosomal protein S25, mitochondrial

Chain AU

28S ribosomal protein S26, mitochondrial