IL_9PGF_085
3D structure
- PDB id
- 9PGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the P state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- AAC*GCU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PGF_085 not in the Motif Atlas
- Geometric match to IL_8CRE_425
- Geometric discrepancy: 0.0793
- The information below is about IL_8CRE_425
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.4
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 215
Unit IDs
9PGF|1|AA|A|1109
9PGF|1|AA|A|1110
9PGF|1|AA|C|1111
*
9PGF|1|AA|G|1130
9PGF|1|AA|C|1131
9PGF|1|AA|U|1132
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain A2
- Small ribosomal subunit protein mS37
- Chain AD
- 28S ribosomal protein S5, mitochondrial
- Chain AJ
- 28S ribosomal protein S12, mitochondrial
- Chain AN
- 28S ribosomal protein S17, mitochondrial
- Chain AT
- 28S ribosomal protein S25, mitochondrial
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