IL_9PGI_015
3D structure
- PDB id
- 9PGI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the A-P-E state with TACO1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- CCCACAG*CCCCUUG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PGI_015 not in the Motif Atlas
- Geometric match to IL_5XWG_002
- Geometric discrepancy: 0.2533
- The information below is about IL_5XWG_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74768.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
9PGI|1|A|C|2057
9PGI|1|A|C|2058
9PGI|1|A|C|2059
9PGI|1|A|A|2060
9PGI|1|A|C|2061
9PGI|1|A|A|2062
9PGI|1|A|G|2063
*
9PGI|1|A|C|2076
9PGI|1|A|C|2077
9PGI|1|A|C|2078
9PGI|1|A|C|2079
9PGI|1|A|U|2080
9PGI|1|A|U|2081
9PGI|1|A|G|2082
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 6
- 39S ribosomal protein L38, mitochondrial
- Chain W
- 39S ribosomal protein L27, mitochondrial
- Chain Z
- 39S ribosomal protein L30, mitochondrial
- Chain f
- 39S ribosomal protein L48, mitochondrial
- Chain j
- 39S ribosomal protein L52, mitochondrial
- Chain o
- Ribosomal protein 63, mitochondrial
Coloring options: