IL_9PGL_031

3D structure

PDB id

9PGL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P state with TACO1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCAAAUCUUA*UUCAGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PGL|1|A|G|2478
9PGL|1|A|C|2479
9PGL|1|A|A|2480
9PGL|1|A|A|2481
9PGL|1|A|A|2482
9PGL|1|A|U|2483
9PGL|1|A|C|2484
9PGL|1|A|U|2485
9PGL|1|A|U|2486
9PGL|1|A|A|2487
*
9PGL|1|A|U|2648
9PGL|1|A|U|2649
9PGL|1|A|C|2650
9PGL|1|A|A|2651
9PGL|1|A|G|2652
9PGL|1|A|C|2653

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain E

39S ribosomal protein L3, mitochondrial

Chain L

39S ribosomal protein L14, mitochondrial

Chain Q

39S ribosomal protein L19, mitochondrial