IL_9PGM_003
3D structure
- PDB id
- 9PGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.18 Å
Loop
- Sequence
- AAAGUAU*AGAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PGM_003 not in the Motif Atlas
- Geometric match to IL_9E6Q_110
- Geometric discrepancy: 0.1194
- The information below is about IL_9E6Q_110
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_02666.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
9PGM|1|A|A|1739
9PGM|1|A|A|1740
9PGM|1|A|A|1741
9PGM|1|A|G|1742
9PGM|1|A|U|1743
9PGM|1|A|A|1744
9PGM|1|A|U|1745
*
9PGM|1|A|A|1753
9PGM|1|A|G|1754
9PGM|1|A|A|1755
9PGM|1|A|A|1756
9PGM|1|A|A|1757
9PGM|1|A|U|1758
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 3
- 39S ribosomal protein L35, mitochondrial
- Chain H
- 39S ribosomal protein L9, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain X
- 39S ribosomal protein L28, mitochondrial
- Chain i
- 39S ribosomal protein L51, mitochondrial
- Chain q
- Growth arrest and DNA damage-inducible proteins-interacting protein 1
Coloring options: