IL_9PGM_043

3D structure

PDB id

9PGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

UACCUAACAAA*UCCUAAACUA

Length

21 nucleotides

Bulged bases

9PGM|1|A|C|2762, 9PGM|1|A|A|2767, 9PGM|1|A|C|2780, 9PGM|1|A|U|2781, 9PGM|1|A|A|2782

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PGM|1|A|U|2759
9PGM|1|A|A|2760
9PGM|1|A|C|2761
9PGM|1|A|C|2762
9PGM|1|A|U|2763
9PGM|1|A|A|2764
9PGM|1|A|A|2765
9PGM|1|A|C|2766
9PGM|1|A|A|2767
9PGM|1|A|A|2768
9PGM|1|A|A|2769
*
9PGM|1|A|U|2778
9PGM|1|A|C|2779
9PGM|1|A|C|2780
9PGM|1|A|U|2781
9PGM|1|A|A|2782
9PGM|1|A|A|2783
9PGM|1|A|A|2784
9PGM|1|A|C|2785
9PGM|1|A|U|2786
9PGM|1|A|A|2787

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain H

39S ribosomal protein L9, mitochondrial

Chain z

Large ribosomal subunit protein uL1m