IL_9PGM_087

3D structure

PDB id

9PGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

AACACUACGA*UUAAAACU

Length

18 nucleotides

Bulged bases

9PGM|1|AA|C|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PGM|1|AA|A|1139
9PGM|1|AA|A|1140
9PGM|1|AA|C|1141
9PGM|1|AA|A|1142
9PGM|1|AA|C|1143
9PGM|1|AA|U|1144
9PGM|1|AA|A|1145
9PGM|1|AA|C|1146
9PGM|1|AA|G|1147
9PGM|1|AA|A|1148
*
9PGM|1|AA|U|1157
9PGM|1|AA|U|1158
9PGM|1|AA|A|1159
9PGM|1|AA|A|1160
9PGM|1|AA|A|1161
9PGM|1|AA|A|1162
9PGM|1|AA|C|1163
9PGM|1|AA|U|1164

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain AJ

28S ribosomal protein S12, mitochondrial

Chain AL

28S ribosomal protein S15, mitochondrial