IL_9PII_058

3D structure

PDB id

9PII (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GU(5MC)*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PII_058 not in the Motif Atlas

Geometric match to IL_8CRE_468

Geometric discrepancy: 0.0505

The information below is about IL_8CRE_468

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

9PII|1|A|G|1405
9PII|1|A|U|1406
9PII|1|A|5MC|1407
*
9PII|1|A|G|1494
9PII|1|A|U|1495
9PII|1|A|C|1496

Current chains

Chain A

16S rRNA

Nearby chains

Chain X

mRNA

Chain Z

Transfer RNA; tRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA