IL_9PIJ_008

3D structure

PDB id

9PIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GG*UGC

Length

5 nucleotides

Bulged bases

9PIJ|1|A|G|94

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PIJ_008 not in the Motif Atlas

Geometric match to IL_8B0X_008

Geometric discrepancy: 0.127

The information below is about IL_8B0X_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28408.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

76

Unit IDs

9PIJ|1|A|G|75
9PIJ|1|A|G|76
*
9PIJ|1|A|U|93
9PIJ|1|A|G|94
9PIJ|1|A|C|95

Current chains

Chain A

16S rRNA

Nearby chains