IL_9PJ8_040

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

9PJ8|1|A|A|1381

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ8_040 not in the Motif Atlas

Homologous match to IL_6CZR_147

Geometric discrepancy: 0.1181

The information below is about IL_6CZR_147

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

9PJ8|1|A|G|906
9PJ8|1|A|A|907
*
9PJ8|1|A|U|1380
9PJ8|1|A|A|1381
9PJ8|1|A|C|1382

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein uS5

Chain X

AURKAIP1/COX24 domain-containing protein