IL_9PJ8_059
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- C(5MC)G*CAAG
- Length
- 7 nucleotides
- Bulged bases
- 9PJ8|1|A|5MC|1387, 9PJ8|1|A|A|1490
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PJ8_059 not in the Motif Atlas
- Homologous match to IL_6CZR_165
- Geometric discrepancy: 0.1534
- The information below is about IL_6CZR_165
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61438.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
9PJ8|1|A|C|1386
9PJ8|1|A|5MC|1387
9PJ8|1|A|G|1388
*
9PJ8|1|A|C|1488
9PJ8|1|A|A|1489
9PJ8|1|A|A|1490
9PJ8|1|A|G|1491
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- Transfer RNA; tRNA
- Chain E
- Small ribosomal subunit protein uS5
- Chain X
- AURKAIP1/COX24 domain-containing protein
- Chain Y
- mRNA 32MF
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