IL_9PJ8_065

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UAAC*GGGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ8_065 not in the Motif Atlas

Geometric match to IL_8GLP_166

Geometric discrepancy: 0.1638

The information below is about IL_8GLP_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

9PJ8|1|A|U|1411
9PJ8|1|A|A|1412
9PJ8|1|A|A|1413
9PJ8|1|A|C|1414
*
9PJ8|1|A|G|1460
9PJ8|1|A|G|1461
9PJ8|1|A|G|1462
9PJ8|1|A|A|1463

Current chains

Chain A

16S rRNA

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA