IL_9PJ8_067

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ8_067 not in the Motif Atlas

Homologous match to IL_6CZR_171

Geometric discrepancy: 0.147

The information below is about IL_6CZR_171

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

183

Unit IDs

9PJ8|1|A|G|1422
9PJ8|1|A|C|1423
9PJ8|1|A|C|1424
*
9PJ8|1|A|G|1451
9PJ8|1|A|U|1452
9PJ8|1|A|C|1453

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain o

50S ribosomal protein L19