IL_9PJ8_091

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ8_091 not in the Motif Atlas

Geometric match to IL_8B0X_083

Geometric discrepancy: 0.082

The information below is about IL_8B0X_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.3

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

9PJ8|1|a|U|788
9PJ8|1|a|G|789
9PJ8|1|a|A|790
9PJ8|1|a|A|791
9PJ8|1|a|G|792
*
9PJ8|1|a|U|809
9PJ8|1|a|G|810
9PJ8|1|a|G|811
9PJ8|1|a|A|812
9PJ8|1|a|G|813

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2