IL_9PJ8_092

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ8_092 not in the Motif Atlas

Geometric match to IL_2O3Y_004

Geometric discrepancy: 0.0947

The information below is about IL_2O3Y_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

95

Unit IDs

9PJ8|1|a|G|794
9PJ8|1|a|U|795
9PJ8|1|a|C|796
*
9PJ8|1|a|G|805
9PJ8|1|a|U|806
9PJ8|1|a|C|807

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2