IL_9PJ8_104

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGG*UUAC

Length

7 nucleotides

Bulged bases

9PJ8|1|a|A|980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ8_104 not in the Motif Atlas

Geometric match to IL_8GLP_063

Geometric discrepancy: 0.3786

The information below is about IL_8GLP_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71625.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

95

Unit IDs

9PJ8|1|a|G|965
9PJ8|1|a|G|966
9PJ8|1|a|G|967
*
9PJ8|1|a|U|978
9PJ8|1|a|U|979
9PJ8|1|a|A|980
9PJ8|1|a|C|981

Current chains

Chain a

23S rRNA

Nearby chains

Chain u

50S ribosomal protein L25