IL_9PJ8_137
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- ACUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 9PJ8|1|a|G|2175
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PJ8_137 not in the Motif Atlas
- Homologous match to IL_7A0S_062
- Geometric discrepancy: 0.1084
- The information below is about IL_7A0S_062
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_28217.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 11
Unit IDs
9PJ8|1|a|A|1853
9PJ8|1|a|C|1854
9PJ8|1|a|U|1855
9PJ8|1|a|C|1856
9PJ8|1|a|G|1857
9PJ8|1|a|G|1858
*
9PJ8|1|a|C|2173
9PJ8|1|a|U|2174
9PJ8|1|a|G|2175
9PJ8|1|a|U|2176
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- 50S ribosomal protein L3
- Chain j
- 50S ribosomal protein L14
Coloring options: