IL_9PJ8_147

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UUAAG*UUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ8_147 not in the Motif Atlas

Homologous match to IL_7A0S_069

Geometric discrepancy: 0.2033

The information below is about IL_7A0S_069

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9PJ8|1|a|U|2034
9PJ8|1|a|U|2035
9PJ8|1|a|A|2036
9PJ8|1|a|A|2037
9PJ8|1|a|G|2038
*
9PJ8|1|a|U|2070
9PJ8|1|a|U|2071
9PJ8|1|a|A|2072
9PJ8|1|a|A|2073
9PJ8|1|a|G|2074

Current chains

Chain a

23S rRNA

Nearby chains