IL_9PJ8_164

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ8_164 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.1453

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

26

Unit IDs

9PJ8|1|a|A|2641
9PJ8|1|a|U|2642
9PJ8|1|a|C|2643
*
9PJ8|1|a|G|2671
9PJ8|1|a|G|2672
9PJ8|1|a|U|2673
9PJ8|1|a|U|2674
9PJ8|1|a|U|2675

Current chains

Chain a

23S rRNA

Nearby chains

Chain V

50S ribosomal protein bL37

Chain l

50S ribosomal protein L16