IL_9PJ8_165

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ8_165 not in the Motif Atlas

Geometric match to IL_3BNN_005

Geometric discrepancy: 0.1013

The information below is about IL_3BNN_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

95

Unit IDs

9PJ8|1|a|C|2643
9PJ8|1|a|U|2644
9PJ8|1|a|U|2645
*
9PJ8|1|a|A|2669
9PJ8|1|a|U|2670
9PJ8|1|a|G|2671

Current chains

Chain a

23S rRNA

Nearby chains

Chain V

50S ribosomal protein bL37

Chain b

5S ribosomal RNA; 5S rRNA

Chain l

50S ribosomal protein L16