IL_9PJ9_026

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ9_026 not in the Motif Atlas

Homologous match to IL_6CZR_407

Geometric discrepancy: 0.2166

The information below is about IL_6CZR_407

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.5

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

9PJ9|1|A|C|576
9PJ9|1|A|G|577
9PJ9|1|A|C|578
*
9PJ9|1|A|G|626
9PJ9|1|A|G|627

Current chains

Chain A

16S rRNA

Nearby chains

Chain H

30S ribosomal protein S8

Chain Q

30S ribosomal protein S17