IL_9PJ9_056

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ9_056 not in the Motif Atlas

Homologous match to IL_6CZR_164

Geometric discrepancy: 0.1628

The information below is about IL_6CZR_164

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PJ9|1|A|C|1289
9PJ9|1|A|G|1290
9PJ9|1|A|G|1291
9PJ9|1|A|A|1292
9PJ9|1|A|U|1293
9PJ9|1|A|U|1294
*
9PJ9|1|A|A|1315
9PJ9|1|A|U|1316
9PJ9|1|A|G|1317
9PJ9|1|A|A|1318
9PJ9|1|A|A|1319
9PJ9|1|A|G|1320

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S13