IL_9PJ9_061

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAU*AGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ9_061 not in the Motif Atlas

Homologous match to IL_6CZR_411

Geometric discrepancy: 0.2203

The information below is about IL_6CZR_411

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

183

Unit IDs

9PJ9|1|A|C|1399
9PJ9|1|A|A|1400
9PJ9|1|A|U|1401
*
9PJ9|1|A|A|1473
9PJ9|1|A|G|1474
9PJ9|1|A|G|1475

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain X

AURKAIP1/COX24 domain-containing protein

Chain a

Large subunit ribosomal RNA; LSU rRNA