IL_9PJ9_104

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UCA*UG

Length

5 nucleotides

Bulged bases

9PJ9|1|a|C|1078

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ9_104 not in the Motif Atlas

Homologous match to IL_7A0S_032

Geometric discrepancy: 0.1943

The information below is about IL_7A0S_032

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

9PJ9|1|a|U|1077
9PJ9|1|a|C|1078
9PJ9|1|a|A|1079
*
9PJ9|1|a|U|1243
9PJ9|1|a|G|1244

Current chains

Chain a

23S rRNA

Nearby chains

Chain i

50S ribosomal protein L13

Chain p

50S ribosomal protein L20

Chain q

Large ribosomal subunit protein bL21

Chain y

50S ribosomal protein L30