IL_9PJ9_119

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUCAA*UGC

Length

8 nucleotides

Bulged bases

9PJ9|1|a|G|1408

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ9_119 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.2041

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

9PJ9|1|a|G|1395
9PJ9|1|a|U|1396
9PJ9|1|a|C|1397
9PJ9|1|a|A|1398
9PJ9|1|a|A|1399
*
9PJ9|1|a|U|1407
9PJ9|1|a|G|1408
9PJ9|1|a|C|1409

Current chains

Chain a

23S rRNA

Nearby chains

Chain r

50S ribosomal protein L22