IL_9PJ9_128

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

9PJ9|1|a|U|1705

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ9_128 not in the Motif Atlas

Geometric match to IL_8B0X_118

Geometric discrepancy: 0.0779

The information below is about IL_8B0X_118

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.5

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9PJ9|1|a|U|1649
9PJ9|1|a|A|1650
9PJ9|1|a|A|1651
9PJ9|1|a|G|1652
*
9PJ9|1|a|U|1702
9PJ9|1|a|G|1703
9PJ9|1|a|A|1704
9PJ9|1|a|U|1705
9PJ9|1|a|G|1706

Current chains

Chain a

23S rRNA

Nearby chains