IL_9PJ9_138

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGAGC*GUGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ9_138 not in the Motif Atlas

Geometric match to IL_9H3G_004

Geometric discrepancy: 0.1859

The information below is about IL_9H3G_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9PJ9|1|a|U|1894
9PJ9|1|a|G|1895
9PJ9|1|a|A|1896
9PJ9|1|a|G|1897
9PJ9|1|a|C|1898
*
9PJ9|1|a|G|1927
9PJ9|1|a|U|1928
9PJ9|1|a|G|1929
9PJ9|1|a|A|1930
9PJ9|1|a|G|1931

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA