IL_9PJ9_145

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UUAAG*UUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ9_145 not in the Motif Atlas

Homologous match to IL_7A0S_069

Geometric discrepancy: 0.2022

The information below is about IL_7A0S_069

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9PJ9|1|a|U|2034
9PJ9|1|a|U|2035
9PJ9|1|a|A|2036
9PJ9|1|a|A|2037
9PJ9|1|a|G|2038
*
9PJ9|1|a|U|2070
9PJ9|1|a|U|2071
9PJ9|1|a|A|2072
9PJ9|1|a|A|2073
9PJ9|1|a|G|2074

Current chains

Chain a

23S rRNA

Nearby chains