IL_9PJ9_153

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

9PJ9|1|a|G|2420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ9_153 not in the Motif Atlas

Homologous match to IL_7A0S_077

Geometric discrepancy: 0.1189

The information below is about IL_7A0S_077

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.3

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9PJ9|1|a|U|2263
9PJ9|1|a|A|2264
9PJ9|1|a|G|2265
*
9PJ9|1|a|U|2418
9PJ9|1|a|G|2419
9PJ9|1|a|G|2420
9PJ9|1|a|G|2421

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2

Chain w

50S ribosomal protein L28