IL_9PJ9_172

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCUCU*ACG

Length

8 nucleotides

Bulged bases

9PJ9|1|a|C|2908

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ9_172 not in the Motif Atlas

Homologous match to IL_7A0S_095

Geometric discrepancy: 0.204

The information below is about IL_7A0S_095

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.13

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

23

Unit IDs

9PJ9|1|a|C|2862
9PJ9|1|a|C|2863
9PJ9|1|a|U|2864
9PJ9|1|a|C|2865
9PJ9|1|a|U|2866
*
9PJ9|1|a|A|2907
9PJ9|1|a|C|2908
9PJ9|1|a|G|2909

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L14

Chain o

50S ribosomal protein L19