IL_9PJ9_181
3D structure
- PDB id
- 9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GGAAACA*UUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PJ9_181 not in the Motif Atlas
- Geometric match to IL_9E6Q_106
- Geometric discrepancy: 0.2854
- The information below is about IL_9E6Q_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_41504.1
- Basepair signature
- cWW-tSH-L-R-L-tHH-cWW
- Number of instances in this motif group
- 5
Unit IDs
9PJ9|1|b|G|23
9PJ9|1|b|G|24
9PJ9|1|b|A|25
9PJ9|1|b|A|26
9PJ9|1|b|A|27
9PJ9|1|b|C|28
9PJ9|1|b|A|29
*
9PJ9|1|b|U|55
9PJ9|1|b|U|56
9PJ9|1|b|A|57
9PJ9|1|b|A|58
9PJ9|1|b|G|59
9PJ9|1|b|C|60
Current chains
- Chain b
- 5S rRNA
Nearby chains
- Chain f
- 50S ribosomal protein L5
- Chain n
- 50S ribosomal protein L18
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