IL_9PKB_071

3D structure

PDB id

9PKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UUGG*UCA

Length

7 nucleotides

Bulged bases

9PKB|1|L5|U|1757

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PKB_071 not in the Motif Atlas

Geometric match to IL_8AF0_002

Geometric discrepancy: 0.3765

The information below is about IL_8AF0_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

67

Unit IDs

9PKB|1|L5|U|1756
9PKB|1|L5|U|1757
9PKB|1|L5|G|1758
9PKB|1|L5|G|1759
*
9PKB|1|L5|U|1773
9PKB|1|L5|C|1774
9PKB|1|L5|A|1775

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL18

Chain LI

Ribosomal protein uL16-like