IL_9PKB_207

3D structure

PDB id

9PKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CAAU*AAUUG

Length

9 nucleotides

Bulged bases

9PKB|1|S2|U|556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PKB_207 not in the Motif Atlas

Geometric match to IL_9AXU_094

Geometric discrepancy: 0.2275

The information below is about IL_9AXU_094

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

9PKB|1|S2|C|527
9PKB|1|S2|A|528
9PKB|1|S2|A|529
9PKB|1|S2|U|530
*
9PKB|1|S2|A|554
9PKB|1|S2|A|555
9PKB|1|S2|U|556
9PKB|1|S2|U|557
9PKB|1|S2|G|558

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain Se

Small ribosomal subunit protein eS30