IL_9PKB_265
3D structure
- PDB id
- 9PKB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human hibernating state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PKB_265 not in the Motif Atlas
- Homologous match to IL_9H3G_235
- Geometric discrepancy: 0.0915
- The information below is about IL_9H3G_235
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.7
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 240
Unit IDs
9PKB|1|S2|G|1706
9PKB|1|S2|U|1707
9PKB|1|S2|C|1708
*
9PKB|1|S2|G|1826
9PKB|1|S2|U|1827
9PKB|1|S2|C|1828
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CB
- Elongation factor 2
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ln
- 60S ribosomal protein L41
Coloring options: