IL_9PKB_274

3D structure

PDB id

9PKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CCCCG*CGGAGCG

Length

12 nucleotides

Bulged bases

9PKB|1|S2|C|1752, 9PKB|1|S2|C|1753, 9PKB|1|S2|C|1783

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKB|1|S2|C|1750
9PKB|1|S2|C|1751
9PKB|1|S2|C|1752
9PKB|1|S2|C|1753
9PKB|1|S2|G|1754
*
9PKB|1|S2|C|1778
9PKB|1|S2|G|1779
9PKB|1|S2|G|1780
9PKB|1|S2|A|1781
9PKB|1|S2|G|1782
9PKB|1|S2|C|1783
9PKB|1|S2|G|1784

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

Ribosomal protein L24