IL_9PKD_046

3D structure

PDB id

9PKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ CHX and HHT treated 80S consensus ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GC*GGC

Length

5 nucleotides

Bulged bases

9PKD|1|L5|G|1266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PKD_046 not in the Motif Atlas

Geometric match to IL_8GLP_048

Geometric discrepancy: 0.0564

The information below is about IL_8GLP_048

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

9PKD|1|L5|G|1244
9PKD|1|L5|C|1245
*
9PKD|1|L5|G|1265
9PKD|1|L5|G|1266
9PKD|1|L5|C|1267

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lb

Large ribosomal subunit protein eL29