IL_9PKD_083
3D structure
- PDB id
- 9PKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ CHX and HHT treated 80S consensus ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 9PKD|1|L5|C|1935, 9PKD|1|L5|A|2041, 9PKD|1|L5|U|2044, 9PKD|1|L5|G|2045
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PKD|1|L5|G|1933
9PKD|1|L5|A|1934
9PKD|1|L5|C|1935
9PKD|1|L5|C|1936
9PKD|1|L5|C|1937
9PKD|1|L5|C|1938
9PKD|1|L5|A|1939
9PKD|1|L5|G|1940
9PKD|1|L5|A|1941
9PKD|1|L5|A|1942
9PKD|1|L5|A|1943
9PKD|1|L5|A|1944
*
9PKD|1|L5|U|2038
9PKD|1|L5|G|2039
9PKD|1|L5|A|2040
9PKD|1|L5|A|2041
9PKD|1|L5|A|2042
9PKD|1|L5|A|2043
9PKD|1|L5|U|2044
9PKD|1|L5|G|2045
9PKD|1|L5|G|2046
9PKD|1|L5|A|2047
9PKD|1|L5|U|2048
9PKD|1|L5|G|2049
9PKD|1|L5|G|2050
9PKD|1|L5|C|2051
9PKD|1|L5|G|2052
9PKD|1|L5|C|2053
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LI
- Ribosomal protein uL16-like
- Chain LO
- 60S ribosomal protein L13a
- Chain Lf
- 60S ribosomal protein L35a
- Chain Lm
- Large ribosomal subunit protein eL40
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