IL_9PKD_161
3D structure
- PDB id
- 9PKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ CHX and HHT treated 80S consensus ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- CCUCGGAUAG*UGCGGAGUG
- Length
- 19 nucleotides
- Bulged bases
- 9PKD|1|L5|C|4757, 9PKD|1|L5|U|4758, 9PKD|1|L5|A|4764, 9PKD|1|L5|G|4870, 9PKD|1|L5|C|4871, 9PKD|1|L5|G|4873, 9PKD|1|L5|U|4876
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PKD|1|L5|C|4756
9PKD|1|L5|C|4757
9PKD|1|L5|U|4758
9PKD|1|L5|C|4759
9PKD|1|L5|G|4760
9PKD|1|L5|G|4761
9PKD|1|L5|A|4762
9PKD|1|L5|U|4763
9PKD|1|L5|A|4764
9PKD|1|L5|G|4765
*
9PKD|1|L5|U|4869
9PKD|1|L5|G|4870
9PKD|1|L5|C|4871
9PKD|1|L5|G|4872
9PKD|1|L5|G|4873
9PKD|1|L5|A|4874
9PKD|1|L5|G|4875
9PKD|1|L5|U|4876
9PKD|1|L5|G|4877
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LE
- Large ribosomal subunit protein eL6
- Chain LH
- 60S ribosomal protein L9
- Chain LM
- 60S ribosomal protein L14
- Chain LO
- 60S ribosomal protein L13a
- Chain LS
- 60S ribosomal protein L18a
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