IL_9PKD_193
3D structure
- PDB id
- 9PKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ CHX and HHT treated 80S consensus ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- GCUCCUCUCCCACUU*AUGCCGAC
- Length
- 23 nucleotides
- Bulged bases
- 9PKD|1|S2|C|131, 9PKD|1|S2|U|132, 9PKD|1|S2|C|133, 9PKD|1|S2|C|134, 9PKD|1|S2|U|135, 9PKD|1|S2|C|136, 9PKD|1|S2|U|137, 9PKD|1|S2|C|138, 9PKD|1|S2|C|139, 9PKD|1|S2|C|142, 9PKD|1|S2|U|143
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PKD|1|S2|G|130
9PKD|1|S2|C|131
9PKD|1|S2|U|132
9PKD|1|S2|C|133
9PKD|1|S2|C|134
9PKD|1|S2|U|135
9PKD|1|S2|C|136
9PKD|1|S2|U|137
9PKD|1|S2|C|138
9PKD|1|S2|C|139
9PKD|1|S2|C|140
9PKD|1|S2|A|141
9PKD|1|S2|C|142
9PKD|1|S2|U|143
9PKD|1|S2|U|144
*
9PKD|1|S2|A|175
9PKD|1|S2|U|176
9PKD|1|S2|G|177
9PKD|1|S2|C|178
9PKD|1|S2|C|179
9PKD|1|S2|G|180
9PKD|1|S2|A|181
9PKD|1|S2|C|182
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SG
- 40S ribosomal protein S6
Coloring options: