IL_9PKD_260

3D structure

PDB id

9PKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ CHX and HHT treated 80S consensus ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PKD_260 not in the Motif Atlas

Geometric match to IL_8GLP_270

Geometric discrepancy: 0.0724

The information below is about IL_8GLP_270

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

81

Unit IDs

9PKD|1|S2|A|1537
9PKD|1|S2|C|1538
9PKD|1|S2|U|1539
*
9PKD|1|S2|A|1594
9PKD|1|S2|U|1595
9PKD|1|S2|U|1596

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19

Chain SZ

Small ribosomal subunit protein eS25