IL_9PKD_261
3D structure
- PDB id
- 9PKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ CHX and HHT treated 80S consensus ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- GCUCAGCGUG*CCGUUGAACCC
- Length
- 21 nucleotides
- Bulged bases
- 9PKD|1|S2|U|1585, 9PKD|1|S2|G|1587
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PKD|1|S2|G|1541
9PKD|1|S2|C|1542
9PKD|1|S2|U|1543
9PKD|1|S2|C|1544
9PKD|1|S2|A|1545
9PKD|1|S2|G|1546
9PKD|1|S2|C|1547
9PKD|1|S2|G|1548
9PKD|1|S2|U|1549
9PKD|1|S2|G|1550
*
9PKD|1|S2|C|1582
9PKD|1|S2|C|1583
9PKD|1|S2|G|1584
9PKD|1|S2|U|1585
9PKD|1|S2|U|1586
9PKD|1|S2|G|1587
9PKD|1|S2|A|1588
9PKD|1|S2|A|1589
9PKD|1|S2|C|1590
9PKD|1|S2|C|1591
9PKD|1|S2|C|1592
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SF
- 40S ribosomal protein S5
- Chain SQ
- Small ribosomal subunit protein uS9
- Chain ST
- 40S ribosomal protein S19
- Chain SU
- 40S ribosomal protein S20
- Chain SZ
- Small ribosomal subunit protein eS25
- Chain Sd
- 40S ribosomal protein S29
Coloring options: