IL_9PN5_006

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

9PN5|1|A1|U|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10396.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

8

Unit IDs

9PN5|1|A1|A|123
9PN5|1|A1|U|124
*
9PN5|1|A1|A|144
9PN5|1|A1|G|145
9PN5|1|A1|U|146
9PN5|1|A1|U|147
9PN5|1|A1|G|148
9PN5|1|A1|U|149

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AG

Large ribosomal subunit protein eL8A

Chain AN

Large ribosomal subunit protein eL15A

Chain Ah

60S ribosomal protein L35-A