IL_9PN5_010

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

UGGGGCCGUU*AGUGCGGUUCUUUGUA

Length

26 nucleotides

Bulged bases

9PN5|1|A1|U|248, 9PN5|1|A1|U|250, 9PN5|1|A1|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PN5|1|A1|U|169
9PN5|1|A1|G|170
9PN5|1|A1|G|171
9PN5|1|A1|G|172
9PN5|1|A1|G|173
9PN5|1|A1|C|174
9PN5|1|A1|C|175
9PN5|1|A1|G|176
9PN5|1|A1|U|177
9PN5|1|A1|U|178
*
9PN5|1|A1|A|238
9PN5|1|A1|G|239
9PN5|1|A1|U|240
9PN5|1|A1|G|241
9PN5|1|A1|C|242
9PN5|1|A1|G|243
9PN5|1|A1|G|244
9PN5|1|A1|U|245
9PN5|1|A1|U|246
9PN5|1|A1|C|247
9PN5|1|A1|U|248
9PN5|1|A1|U|249
9PN5|1|A1|U|250
9PN5|1|A1|G|251
9PN5|1|A1|U|252
9PN5|1|A1|A|253

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AG

Large ribosomal subunit protein eL8A

Chain AL

60S ribosomal protein L13-A

Chain Ah

60S ribosomal protein L35-A

Chain Aj

60S ribosomal protein L37-A